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Detailed information on CNT30375706


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-157

BLAST vs NONCODE:
NONBRAT003540, E-value = 3e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3075899Arabidopsis thalianaBrassica juncea45.7845.0187.78401forward
CNT30612723Arabidopsis thalianaArabis alpina73.435.1488.34643forward
CNT30479038Arabidopsis thalianaArabidopsis halleri37.5655.2996.66329forward

Expression of CNT30375706

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MLNVLLSFNCQLMPVFVRRILLIQNIVNRFRHHVERCCNGIQTLTRRRSLLLCSDSWKIRCFRGTRRFLIHLTKCCYGYGFTSVSNHQRF*

>peptide 2 (49 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVEEVVVDHHQVKEVLLKAS*

>peptide 3 (66 aa)
MCFSLSTANLCLSLYAGYFSSKTLSTDLDITWNDAATEFKPSPGEEACCCVLILGRFGVSGVPGDS*

>peptide 4 (32 aa)
MATDSPAFLIIKDSKGPLCLFILELSLPGDPP*

>peptide 5 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

Sequence

>CNT30375706
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGAGGAGGTGGTGGTGGACCACCACCAGGTAAAGGAGGTCTTGCTGAAGGCAAGTTAGTACTTTTACCACCTCCAGCTG
ATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCGTTTTCGCTGGCTTTACCTTCGTT
AGATTCATTTGACTCGTTAGACTGATCACCTGTGGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTTAGTTGAGCAAGTTTAGGAGGCAAAGCC
ACATTACCGCCAAATCTCTCTGCTCTTGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCAACTTATGCCTGTCTTTGTACGCAGGAT
ACTTCTCATCCAAAACATTGTCAACCGATTTAGACATCACGTGGAACGATGCTGCAACGGAATTCAAACCCTCACCCGGAGAAGAAGCTTGTTGTTGTGT
TCTGATTCTTGGAAGATTCGGTGTTTCAGGGGTACCAGGAGATTCTTGATCCACTTGACCAAATGTTGTTATGGCTACGGATTCACCAGCGTTTCTAATC
ATCAAAGATTCTAAAGGACCTCTCTGTTTATTCATACTCGAGCTAAGTCTTCCCGGTGATCCTCCGTAAAATGATC