CANTATAdb - search

Detailed information on CNT30538913

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3061202	Brassica napus	Arabidopsis lyrata	45.28	90.13	87.63	283	forward

Expression of CNT30538913

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLNMLLPLNRKLMPIFIRRILLVQNIINRLRHH

>peptide 2 (43 aa)
AKRNVDRFSISPIILLLASDELPVPGEIREGEPSFFASRFIND*

>peptide 3 (83 aa)
LLRGTLIDSLFHQSYCSSLQMSYQFLERSEKVNHLSSLHVSSTTDKTQQAQELCELCSRFPLLFQVLQEEVGEVVDHHQAKEV*

Sequence

>CNT30538913
CTGCTAAGAGGAACGTTGATCGATTCTCTATTTCACCAATCATATTGCTCCTCGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAGAGAAGGTGAACC
ATCTTTCTTCGCTTCACGTTTCATCAACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTGCTCCCGCTTCCCGCTCCTCTTCCAAGTGCT
CCAGGAGGAGGTGGGGGAGGTGGTGGACCACCACCAGGCAAAGGAGGTCTAGGGGAAGGCACATTAGTACTTTTACCACCTCCAGCTGATCTAGGAGGCG
GGCGAGGCACCCTAGGAGGACGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTGGCTTTACCATCGTTGCCGTCGCTAGA
CTGATCACTTGCGGTAACCGTCCTGGTCAAGGAGGGAACTGAAACTGGTTTCTCCTTGAGCTGAGCTAGTTTAGGAGGCAAAGCCACATTGCCTCCAAAC
CTCTCAGCCCTCGCTTGATCTGCTTTATGCTTAATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATACTTCTCGTCCAGAA
CATTATCAACCGACTTAGACATCAC