Detailed information on CNT30375313


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538901Arabidopsis thalianaBrassica napus48.1265.2589.82383forward
CNT3061202Arabidopsis thalianaArabidopsis lyrata39.4510094.27314forward

Expression of CNT30375313

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MCFSLSTANLCLSLYAGYFSSKTLSTDLDITWNDAATEFKPSPGEEACCCVLILGRFGVSGVPGDS*

>peptide 2 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

>peptide 3 (44 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVDHHQVKEVLLKAS*

>peptide 4 (89 aa)
MLNVLLSFNCQLMPVFVRRILLIQNIVNRFRHHVERCCNGIQTLTRRRSLLLCSDSWKIRCFRGTRRFLIHLTKCCYGYGFTSVSNHQRF

Sequence

>CNT30375313
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGACCACCACCAGGTAAAGGAGGTCTTGCTGAAGGCAAGTTAGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGC
GAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCGTTTTCGCTGGCTTTACCTTCGTTAGATTCATTTGACTC
GTTAGACTGATCACCTGTGGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTTAGTTGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAAT
CTCTCTGCTCTTGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCAACTTATGCCTGTCTTTGTACGCAGGATACTTCTCATCCAAAA
CATTGTCAACCGATTTAGACATCACGTGGAACGATGCTGCAACGGAATTCAAACCCTCACCCGGAGAAGAAGCTTGTTGTTGTGTTCTGATTCTTGGAAG
ATTCGGTGTTTCAGGGGTACCAGGAGATTCTTGATCCACTTGACCAAATGTTGTTATGGCTACGGATTCACCAGCGTTTCTAATCATCAAAGATTC