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Detailed information on CNT30599240


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550041Fraxinus excelsiorIpomoea triloba79.7624.7286.71331reverse complement
CNT30730673Fraxinus excelsiorCorchorus capsularis30.1218.8384125reverse complement
CNT30401817Fraxinus excelsiorBeta vulgaris52.2988.9383.87217reverse complement
CNT30542072Fraxinus excelsiorBrassica napus46.0215.8285.86191reverse complement
CNT30235691Fraxinus excelsiorBrassica oleracea41.6926.8684.39173reverse complement
CNT30437323Fraxinus excelsiorAegilops tauschii56.8730.7382.63236reverse complement
CNT3060121Fraxinus excelsiorArabidopsis lyrata46.0219.6386.39191reverse complement
CNT30609565Fraxinus excelsiorGossypium raimondii45.0622.583.96187reverse complement
CNT30368658Fraxinus excelsiorSorghum bicolor26.5118.6184.55110forward

Expression of CNT30599240

Peptides detected in this lncRNA

>peptide 1 (45 aa)
QFSIGSKWLSIKRRKSYFNFKNIKMKLPLCQERTKRVSYPANFPN*

Sequence

>CNT30599240
GCAATTCTCCATTGGTAGCAAATGGTTATCTATTAAGCGGAGGAAATCTTATTTCAATTTCAAAAACATAAAAATGAAGCTCCCACTCTGTCAAGAACGG
ACTAAGAGGGTCAGCTACCCAGCTAACTTTCCTAATTAAATACCGTTACTGTATAGGTGGATCTCATTGTGAAAGACCTATTACTGGATAATTCATGGGT
AGAGCCAAAGAGTGTGGTGTGAACTATACAAGTTACCAATAACTTTGATTGAATGAAGGAAAGGCTCCGGTGTATAGAGAAGACCTCACCGTTTAAGAAG
TAACCATAGAAACGACGGAACCCACTATTTCTTTATCCATTTAATTTATATTTATTTTTACTATATTTTTCACACTTAGCAGAATAAAATTTCTTATTTC
TTTCGTATTTCGCAG