Detailed information on CNT30368658


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692160Sorghum bicolorOryza sativa30.9649.1989.07183forward
CNT30200508Sorghum bicolorPisum sativum12.0131.8491.5571reverse complement
CNT30219845Sorghum bicolorHordeum vulgare15.2343.2797.7890forward
CNT30542072Sorghum bicolorBrassica napus21.3210.4484.13126reverse complement
CNT30437323Sorghum bicolorAegilops tauschii100.1777.0891.72592reverse complement
CNT3060121Sorghum bicolorArabidopsis lyrata21.3212.9584.92126reverse complement
CNT30599240Sorghum bicolorFraxinus excelsior18.7826.7584.68111forward
CNT30369364Sorghum bicolorOryza glumipatula16.9224.0494100forward
CNT30103691Sorghum bicolorOryza rufipogon31.9810.995.24189reverse complement

Expression of CNT30368658

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTRVPRGYIARRRRTKMRSFASNFRGAHLRLN

Sequence

>CNT30368658
TATCTCTTGACCGGAGGAAATAGTAATAAAAAGAAAAAGGCTTATGCTCCTTTATCTTAAAAGAACAGACTAAAGGGTCAGCTACTTAGCCAACTTTCAT
AATTAAATACCGTCATTGTATGAATAATTCTTATTGTGAAAAGAGTTATTTACTCTATAATGGATAGGTAGAGCCAAAGAATGTGAACTATACAAGTTCA
CAATACCTTTTGATGAAATGAAAGAAAGAGCTCCGGTGTATAGAGAGGGCCTCGGCGTTTAAAAGGGAACCATAAAAACGATGGAACCCACTGTTTTTTT
AGTATCGTTAGAATTTGTTATTTCTATGCGAAATAACTGAATAGAATAAAAAATCGTGGTTGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTAATATT
TTATATATCGGAATAATCTGTTTAGTTATTAATAGGAAAAAAGAGGGTTAAAAGAAGAAAAATCATTAGTTATTCATTAAGGTTAATTTGATTCAATGAC
CAGAGTTCCGCGAGGATATATAGCTCGGAGACGACGAACAAAAATGCGTTCATTTGCCTCAAACTTTAGAGGGGCTCATTTAAGACTTAAT