Detailed information on CNT30550041


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730673Ipomoea trilobaCorchorus capsularis22.445.1885300forward
CNT30401817Ipomoea trilobaBeta vulgaris5.2328.699070forward
CNT30200508Ipomoea trilobaPisum sativum5.633.6394.6775forward
CNT3084074Ipomoea trilobaVigna radiata6.3531.3784.7185forward
CNT30235691Ipomoea trilobaBrassica oleracea13.1427.3385.23176forward
CNT30599240Ipomoea trilobaFraxinus excelsior24.7279.7686.71331reverse complement
CNT30609565Ipomoea trilobaGossypium raimondii30.148.582.13403forward

Expression of CNT30550041

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIEFNNEWSSFFHSIPFTQILTIYTGKVLFFFLLLCAS*

>peptide 2 (40 aa)
MIEFNNEWSSFFHSIPFTQILTIYTGKVLFFSFVMCQLII*

>peptide 3 (46 aa)
MHFCSASPSYISPFNSGHGINETFSNNSFFLSFSYSFIYSVFYYYN*

>peptide 4 (32 aa)
MYKIKIPMAFATITFPTTIFLFLFRYFTTKQE*

>peptide 5 (29 aa)
MKLFRITHFFFLSAILLFTLSSITITNKN*

>peptide 6 (35 aa)
MDNHMLPMENLFSSSIEVIGFAPMETINFIHNRGI*

>peptide 7 (35 aa)
MDNHLLPMENLFSSSIEVIGFAPMETINFIHNRGI*

Sequence

>CNT30550041
TCGTTATGTTTTTTAAATAGGATTTCCTCCGCTTAATGGATAACCATATGCTACCAATGGAGAATTTATTCTCATCTTCAATTGAGGTAATTGGATTTGC
ACCAATGGAAACCATAAACTTTATACACAATAGAGGGATATGATAGAGTTTAATAATGAGTGGAGTTCCTTCTTCCATTCTATCCCATTCACTCAGATAC
TGACCATTTATACTGGAAAAGTTCTTTTTTTTTTTCTTTTGTTATGTGCCAGCTGATAATCTAAACGAGTCGCACATACACCCTAGNNNNNNNNNNNNNN
NNNNNNNNNNNGCTCATCGGGATAGGGATAGGCAAAAGAGAGATTTTCGTCGGTTGTGGATCATGAAGCCAAAGCTCTTTTTTCCTGTTGAGTCATAGTT
CGAGTAAGCCTTGAATGAGCCCCTCGAAAACTTGATGCAAAGAAATGCATTTTTGTTCGGCGTCTCCGAGCTATATATCCCCGTTTAATTCTGGTCATGG
AATAAATGAAACTTTTTCGAATAACTCATTTTTTCTTTCTTTCAGCTATTCTTTTATTTACTCTGTCTTCTATTACTATAACTAACAAAAACTAACAAAA
CGGATTTCTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCAACCACGATTTTTCTTTTTTTGTTTAGGTATTTTACCACGA
AACAAGAATAAGAAAGACATAAGAAATTTTATTTTCCTATAAAAAATAGAGTAAAAAAAATAAATAAATAAAACTAGATAAAGAAATAGTGGGGTTCCTT
CGTTTCTATGGTTACTTCTGAAACGGTGAGGTCTTCTCTATACACCGGAGCCTTTCACTTCATTTAATCAACTAATCAACGTTATTGGGAACTTGTATAG
TTCACATTCTTTGGCTCTACCCATGAATTTTCCAGTAATAGGTCTTTCACAACGAGATCTACTTATAAAGTAACGGTATTTAAGTATGAAAGTTAGCTGG
GGTAGCTGGCCCTGTTAGTCCGTTCTTGCCAGAGTGGGAGCCTAATCGTTATGTTTTTTAAATAGGATTTCCTCCGCTTAATGGATAACCATTTGCTACC
AATGGAGAATTTATTCTCATCTTCAATTGAGGTAATTGGATTTGCACCAATGGAAACCATAAACTTTATACACAATAGAGGGATATGATAGAGTTTAATA
ATGAGTGGAGTTCCTTCTTCCATTCTATCCCATTCACTCAGATATTGACCATTTATACTGGAAAAGTTCTTTTTTTTTCTTTTGTTATGTGCCAGCTGAT
AATCTAAACGAGTCGCACATACACCCTAGTATATGTTCC