« Back to Eragrostis curvula search


Detailed information on CNT30593838


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZSP6|AIR1L_ARATH, E-value = 3e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Eragrostis curvulaOryza sativa11.6525.4496.5186forward
CNT30678378Eragrostis curvulaSetaria viridis13.1423.0489.6997forward
CNT30552987Eragrostis curvulaOryza glaberrima22.0923.5292.02163forward
CNT30447788Eragrostis curvulaSaccharum spontaneum29.5437.5989.45218forward
CNT30367039Eragrostis curvulaSorghum bicolor30.3538.2983.04224forward
CNT30105270Eragrostis curvulaOryza longistaminata22.0931.4190.8163forward
CNT30101097Eragrostis curvulaOryza rufipogon22.0916.4392.02163forward
CNT30575856Eragrostis curvulaOryza barthii20.4616.6992.72151forward

Expression of CNT30593838

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MGRLRLMPRTLPRRAVQRHAAASRSARPWRRVQHGVLGGFPRLTLISPLSTLAPHLQPQASAKLKKSRFRARSAATTATFFAIMDGWRC*

>peptide 2 (32 aa)
DHSWHICQRYKHDDNDIYDGDVRVKHQGSQDA*

>peptide 3 (51 aa)
MVRGSCPSGSTRTYAHTHTKDDDGHDKLARTITEDRQQNGGALLIELMMSP*

>peptide 4 (30 aa)
MQLDRDGTWIVPLWIDTYIRTHTYKGRRRT*

Sequence

>CNT30593838
TTGATCATTCATGGCACATATGTCAAAGGTACAAACATGATGATAATGATATATATGATGGTGATGTACGCGTAAAACATCAAGGTAGCCAAGACGCATG
ATCTGCAGGGAGATCAGCGGGCACACACGCGTTAACATCCGTACGTCGTAGTAGCATGATGGTAGGTAGGAACTAATTAAGGAACACATGCAGCTAGATA
GAGATGGTACGTGGATCGTGCCCCTCTGGATCGACACGTACATACGCACACACACATACAAAGGACGACGACGGACATGACAAGCTAGCTAGGACAATTA
CTGAAGATCGACAACAGAATGGAGGAGCACTGCTTATTGAATTGATGATGAGCCCTTGACGATCGATGATTCTTGTTCAGGATCAGGGGCACTGGAAGCC
GGAGGGGACGCGGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCGAGGACGTTGCCGCGGAGGGCGGTGCAGAGA
CACGCCGCGGCTTCGAGGTCGGCGAGGCCCTGGAGGAGGGTGCAGCACGGCGTCTTGGGCGGCTTCCCAAGGTTGACGTTGATCAGCCCGTTGAGCACGT
TGGCGCCGCACTTGCAGCCGCAGGCGTCAGCGAAGCTGAAGAAGAGCAGGTTCAGAGCCAGGAGCGCCGCGACCACAGCGACCTTCTTCGCCATCATGGA
TGGCTGGCGTTGCTAGCTACCTAGTAGGATTCTGCCTC