Detailed information on CNT30367039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187285Sorghum bicolorSecale cereale2031.6290.6117forward
CNT30553011Sorghum bicolorOryza glaberrima25.1316.8685.71147forward
CNT30447788Sorghum bicolorSaccharum spontaneum38.6338.9789.82226forward
CNT30684877Sorghum bicolorTriticum urartu28.5526.3485.63167forward
CNT30369831Sorghum bicolorOryza glumipatula28.5527.2480.24167forward
CNT30105270Sorghum bicolorOryza longistaminata20.5123.1288.33120forward
CNT30101097Sorghum bicolorOryza rufipogon36.4121.4782.63213forward
CNT30575856Sorghum bicolorOryza barthii25.1316.2485.71147forward
CNT30116368Sorghum bicolorOryza nivara28.2126.4880165forward
CNT30593838Sorghum bicolorEragrostis curvula38.2930.3583.04224forward

Expression of CNT30367039

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VDTLHVCMHDVRFMKKHTQSNQSKAKQNKLKQWTNIDVYYE*

>peptide 2 (55 aa)
MERHDWMDHGSSGALEARGDVLAAVVDEEAEVDGQIEVNPQDVGPERRAEAHRRL*

>peptide 3 (83 aa)
MGRLRLIPRMLALSAVQRHTAASRSASPWINVQHGVLGGVPRVTLISPFSTLAHTPNFSVSMGQRSSAPPPPLPLPPPPLPLPP

>peptide 4 (31 aa)
MSTTSSLYILQRNHHYYLALPGAQRACMDRR*

Sequence

>CNT30367039
TTGTGGACACGCTGCATGTATGCATGCATGATGTTAGATTCATGAAAAAACACACCCAAAGCAATCAAAGCAAAGCAAAACAAAACAAATTGAAGCAATG
GACGAACATTGATGTCTACTACGAGTAGCTTGTACATCTTGCAAAGAAATCATCATTATTATTTAGCACTGCCGGGTGCACAGCGTGCGTGCATGGATCG
ACGATGACGGAGGAATCGAAGGAGGCGACGATGGATGGAGAGACATGATTGGATGGATCATGGCTCTTCAGGAGCACTGGAAGCCCGAGGGGACGTCCTT
GCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGCAGATTGAGGTTAATCCCCAGGATGTTGGCCCTGAGCGCCGTGCAGAGGCACACCGCCGCCTCT
AGGTCTGCCAGCCCCTGGATCAATGTGCAGCATGGCGTCTTGGGCGGTGTCCCCAGGGTCACGTTGATCAGCCCATTCAGCACGTTGGCGCACACACCTA
ACTTCAGTGTGTCCATGGGGCAACGCTCGAGTGCCCCGCCGCCTCCGCTTCCGCTACCACCGCCTCCGCTGCCGCTACCACCACT