Detailed information on CNT30678378


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Setaria viridisOryza sativa19.2423.9688.8981forward
CNT30446343Setaria viridisSaccharum spontaneum23.5213.692.9399reverse complement
CNT30369755Setaria viridisOryza glumipatula22.5715.5787.3795forward
CNT30100956Setaria viridisOryza rufipogon22.5712.5587.3795forward
CNT30575905Setaria viridisOryza barthii22.5715.2587.3795forward
CNT30593838Setaria viridisEragrostis curvula23.0413.1489.6997forward

Expression of CNT30678378

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MGRLRVMPSTLAPHLQPQASAKAKKRRLRARSVATTEAFFAAMVACGLASASAISLPH*

>peptide 2 (30 aa)
TSSIRVALARHAAYICVTLYRWITEIKDDR*

Sequence

>CNT30678378
ACGTCGTCCATACGTGTAGCGCTAGCTAGGCACGCAGCGTATATATGTGTGACGTTGTATAGATGGATCACAGAAATTAAGGACGATCGCTAGCTTAGCT
TATTCAACCAACCAACCAAACCATTGACGACGACGGACCATAATTAAGTAGCTAGCTACTAGGCATCGATCGATTCAGGAGCACTGGAATCCGGTGGGGA
CGCGCCTGCCGCAGTAGTTCACGAGGAGGCTGAGGTTGATGGGCAGGTTGAGGGTGATGCCCAGCACGTTGGCGCCGCACTTGCAGCCGCAGGCGTCGGC
GAAGGCGAAGAAGAGGAGGTTGAGGGCCAGGAGCGTGGCGACCACGGAGGCTTTCTTCGCCGCCATGGTGGCTTGCGGGCTAGCTAGTGCTTCTGCTATC
TCTCTGCCGCACTAGTGGTGC