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Detailed information on CNT30552987


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZSP6|AIR1L_ARATH, E-value = 7e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105270Oryza glaberrimaOryza longistaminata70.8594.6193.28491forward
CNT30101097Oryza glaberrimaOryza rufipogon71.2849.897.57494forward
CNT30593838Oryza glaberrimaEragrostis curvula23.5222.0992.02163forward

Expression of CNT30552987

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGRLRLMPRMLARRAVQRHTAASRSARPWMRLQHGCRGGGMSRTGSRTRRRR*

>peptide 2 (37 aa)
RTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30552987
TACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAAT
TACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACA
AGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCA
GCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCA
AGGATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGTCGGCGAGGCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGGCGGCATGA
GCCGCACTGGCAGCCGCACGCGTCGGAGAAGGTGAAGAAGAGGAGGTTCAGGGCCAGGAGCGTGGCGATCACCCCAGCTTTCGTCGCCATGCCCACCCAC
CGCACTGCACCTGCAGATCGATCTCGATCTATGGCCTGCCCTCTACCTAGCTTTGCTTGCTAGCCAGTGTATTCAGATACATCTATCGACCAA