Detailed information on CNT30227445


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221137Ananas comosusHordeum vulgare20.8321.3395.5645forward
CNT30586204Ananas comosusMusa acuminata20.378.2690.9144forward
CNT30463555Ananas comosusSaccharum spontaneum20.8314.5295.5645forward
CNT30585090Ananas comosusEchinochloa crusgalli20.832.6393.3345forward

Expression of CNT30227445

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ERYSSLVRSAKRLRPSSIPQNRHAPRSSHHSHH*

>peptide 2 (37 aa)
MPPAAATTATIKLKAKETRSTEEPPNREEEPIFFLFF*

>peptide 3 (70 aa)
GAVLVVGEIGEAVEAELHTPKSTCPPQQPPQPPLSSRLRRRGAQKSLLTEKKNPFSFFSFSFPFSSFWLLF

Sequence

>CNT30227445
TGGAGCGGTACTCGTCGTTGGTGAGATCGGCGAAGCGGTTGAGGCCGAGCTCCATACCCCAAAATCGACATGCCCCCCGCAGCAGCCACCACAGCCACCA
TTAAGCTCAAGGCTAAGGAGACGAGGAGCACAGAAGAGCCTCCTAACCGAGAAGAAGAACCCATTTTCTTTCTTTTCTTTTAGCTTTCCTTTCTCTTCTT
TTTGGCTTCTCTTCTT