Detailed information on CNT30553550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586520Oryza glaberrimaMusa acuminata33.4710.9783.7580forward
CNT30464311Oryza glaberrimaSaccharum spontaneum98.7446.9287.29236forward
CNT303678Oryza glaberrimaZea mays41.847.0291100forward
CNT30365808Oryza glaberrimaSorghum bicolor55.2315.7588.64132forward
CNT30585090Oryza glaberrimaEchinochloa crusgalli55.657.7788.72133forward
CNT30498134Oryza glaberrimaDigitaria exilis54.8133.2587.79131forward
CNT30558531Oryza glaberrimaPanicum hallii48.9546.9985.47117forward

Expression of CNT30553550

Peptides detected in this lncRNA

>peptide 1 (78 aa)
PQPPWSLISATAPLVLQSTDSGSASLSAARYLSLTFLSLRGLFLRPRRKEWTPASAAALCSSMYRRLSLNAAYRRSSSP

>peptide 2 (64 aa)
ATSLVLDLSHGPLGPPVNGLRQRLVVGGEVPVADLPLPPRLVPEAEAEGVDPGVGGGVVLVDVP*

Sequence

>CNT30553550
CCGCAACCTCCCTGGTCCTTGATCTCAGCCACGGCCCCCTTGGTCCTCCAGTCAACGGACTCCGGCAGCGCCTCGTTGTCGGCGGCGAGGTACCTGTCGC
TGACCTTCCTCTCCCTCCGCGGCTTGTTCCTGAGGCCGAGGCGGAAGGAGTGGACCCCGGCGTCGGCGGCGGCGTTGTGCTCGTCGATGTACCGTAGGTT
GTCCCTGAACGCCGCGTACCGCCGCTCCTCCTCGCCGAC