Detailed information on CNT30466088


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30365808Saccharum spontaneumSorghum bicolor54.2817.4297.95146forward
CNT30585090Saccharum spontaneumEchinochloa crusgalli72.4911.493.85195forward
CNT30498134Saccharum spontaneumDigitaria exilis52.0435.5391.43140forward
CNT30558531Saccharum spontaneumPanicum hallii70.2675.993.12189forward

Expression of CNT30466088

Peptides detected in this lncRNA

>peptide 1 (47 aa)
PQLPWSLTSATAPLVLQSTDSGSSTLSSAWYLALSFLSLCGLVLTPR*

>peptide 2 (66 aa)
AAALVLDLRDGALGPPINGLRQLHVVVGVVPGAELPLPLRLGPDAEVGGAVLLVGEVGEAVEAEAS*

Sequence

>CNT30466088
CCGCAGCTGCCCTGGTCCTTGACCTCCGCGACGGCGCCCTTGGTCCTCCAATCAACGGACTCCGGCAGCTCCACGTTGTCGTCGGCGTGGTACCTGGCGC
TGAGCTTCCTCTCCCTCTGCGGCTTGGTCCTGACGCCGAGGTAGGTGGCGCGGTACTCCTCGTTGGTGAGGTCGGCGAAGCGGTTGAGGCCGAGGCGAGC
TAGCTAGCTAGGAAGAGGAGGGAGCAGATGGATGGATGAGAGGATGACAGGAGGCTGGAGGTCTCCCTT