Detailed information on CNT30584554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695524Echinochloa crusgalliOryza sativa27.914.6593.3360forward
CNT30523309Echinochloa crusgalliSetaria italica30.75.6495.4566forward
CNT30554731Echinochloa crusgalliOryza glaberrima30.74.6193.9466forward
CNT301349Echinochloa crusgalliZea mays38.1427.1595.1282forward
CNT30354352Echinochloa crusgalliEragrostis tef32.0918.792.7569forward
CNT30596738Echinochloa crusgalliOryza meridionalis62.3323.886.57134forward
CNT30370946Echinochloa crusgalliOryza glumipatula30.75.3492.4266forward
CNT30102823Echinochloa crusgalliOryza rufipogon30.77.3392.4266forward
CNT30577292Echinochloa crusgalliOryza barthii30.75.9593.9466forward

Expression of CNT30584554

Peptides detected in this lncRNA

>peptide 1 (70 aa)
AVEVGGGSEAGEPLALGLRLEEGRRRLERRRRRAEGRDRGAGGDGRHAFDLSRGASARGVAEQWQRGRRSS

Sequence

>CNT30584554
CTGCCGTCGAGGTAGGTGGGGGAAGCGAGGCCGGGGAGCCACTCGCCCTTGGCCTCCGCCTTGAGGAAGGCCGACGACGACTTGAGCGACGCCGTCGACG
GGCGGAGGGCCGCGACCGGGGCGCGGGCGGTGACGGACGCCATGCCTTCGATCTTTCCCGGGGAGCTAGCGCGCGAGGAGTAGCAGAGCAGTGGCAGAGG
GGGAGGAGATCGAGC