Detailed information on CNT30695524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554749Oryza sativaOryza glaberrima55.1640.9197.89711forward
CNT30596727Oryza sativaOryza meridionalis30.181.5193.04388forward
CNT30370824Oryza sativaOryza glumipatula42.240.9698.71544forward
CNT30102835Oryza sativaOryza rufipogon82.47100.1998.491063forward
CNT30577305Oryza sativaOryza barthii71.06100.6697.93916forward
CNT30584554Oryza sativaEchinochloa crusgalli4.6527.9193.3360forward

Expression of CNT30695524

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MMVLCHGSDRQQHPGHPQHRPPPVHQLRLHEPPQVLRVLRQTQRVEPVIAWQAVHTRLTIVLVVFL*

>peptide 2 (55 aa)
MMLSTGSRNIFFLCVCSPAVEVGGRREAGEPLSLGLRPNITPRSRCAGEAGGGLP*

>peptide 3 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 4 (37 aa)
MHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 5 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 6 (49 aa)
MRCWVGVANGRRRLLSSVIRMPGYGGIKGRVSIGWRSQLWLVAAATSDG*

>peptide 7 (49 aa)
MGGVASYPALSGCRDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSE

Sequence

>CNT30695524
TGAATCTGTACGGATTTTTTTTTTTTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTT
ATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCA
CTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCT
CTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCG
GTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGC
CACGGGTCAGACAGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCC
TCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTACACACCCGTTTAACTATCGTGTTAGTAGTTTTTTTATGATGCTCTCTACTGGT
AGTAGAAATATATTTTTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACA
TTACGCCTCGTAGTCGGTGCGCGGGCGAGGCGGGTGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGAGCGGAGGGCTGCGACCGGGGTGC
GGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAA
AGGCGTGGCTTGTATTAAACTGTCCGGGAGTGGCCGGCGCTGCCAGGTGTCCACGGCGGCGAGGGCGGCGACGGACGGCGGAGATCGGTGGTGGGGGTGG
ATCGGACGGCCAGGATGCGTTGTTGGGTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCAGCGTTATCCGGATGCCGGGATACGGGGGAATCAAAGG
GAGGGTTTCTATTGGATGGAGGTCTCAGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTGAGATGGTTGGTGCAGATCGCTCGGAG