« Back to Echinochloa crusgalli search


Detailed information on CNT30581184


BLAST search results

BLAST vs Swiss-Prot:
sp|P08221|CB21_CUCSA, E-value = 6e-104

BLAST vs NONCODE:
NONSTUT001352, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Echinochloa crusgalliSetaria viridis38.8349.3697.4346forward
CNT30641254Echinochloa crusgalliNymphaea colorata63.5256.187.28566forward
CNT30709832Echinochloa crusgalliGlycine max61.1759.9685.5545forward
CNT30251114Echinochloa crusgalliAvena sativa66.5556.7593.09593forward
CNT3013606Echinochloa crusgalliZea mays6758.0293.47597forward
CNT30129909Echinochloa crusgalliCorymbia citriodora61.0574.8391.54544forward
CNT30363113Echinochloa crusgalliSorghum bicolor59.4853.8193.77530forward
CNT30556492Echinochloa crusgalliPanicum hallii60.2758.5696.28537forward

Expression of CNT30581184

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MKKLQNRVTSLVAGDEVGGVGPGVVVDRVGEVVGEVLERALAGDDGLDEESEHGEHGEAAVLELLDLELGEGLGVVSQMARMLWAWIRLGLPR*

>peptide 2 (55 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARWRGCSGRGSGWGCRGSRVRPR*

>peptide 3 (50 aa)
MRQLACSINQSIHVRPRPLRKIIDNEEVAESRDELSCRGRSWWRRPRRCC*

>peptide 4 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30581184
AACAAATCAAAGAGTAGAAAGCGGGAGGAAAATGTAAGAAGTCCTTAATCTGACAACTCAAATAATTAACCACCAGGGAAACAAACCCACTATTGCACAA
ACATCATCTTTCATCCTAGTGTACAACGCCAACTCATCATCATCTCGACGTACTTGCCCCTGAAATGCAACGTGAAACAAGAGACGACACACATGCATGC
GGCAGCTAGCTTGCAGCATCAATCAATCGATCCACGTACGCCCCCGGCCTCTCCGGAAGATAATCGACAATGAAGAAGTTGCAGAATCGCGTGACGAGCT
TAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGA
CGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCAGC
CAGATGGCGAGGATGCTCTGGGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGTCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGG
CCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCG
GTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAG
AAGGGGCCCAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATCGTGA