Detailed information on CNT30556492


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-140

BLAST vs NONCODE:
NONSTUT001352, E-value = 8e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641254Panicum halliiNymphaea colorata55.5150.4586.64509forward
CNT30534267Panicum halliiEucalyptus grandis53.4448.6187.35490forward
CNT30251666Panicum halliiAvena sativa68.8161.8690.17631forward
CNT30664832Panicum halliiTriticum dicoccoides60.5260.9994.95555forward
CNT30471514Panicum halliiSaccharum spontaneum60.6366.1190.47556forward
CNT3013606Panicum halliiZea mays66.5259.2895.41610forward
CNT30129909Panicum halliiCorymbia citriodora54.0968.2389.11496forward
CNT30363113Panicum halliiSorghum bicolor95.9789.3490.68880forward
CNT30369242Panicum halliiOryza glumipatula69.6865.9487.01639forward
CNT30581184Panicum halliiEchinochloa crusgalli58.5660.2796.28537forward

Expression of CNT30556492

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MRQLAASMNPRTPPPEDNEVAERMELSCRGRSWWSARFSSGPLPVTMAWTKNPNMENMARRPFLSSFTLSSAKASGSSARPRGSKMLWAWIRLGLPR*

>peptide 2 (41 aa)
PLKSDKSMINHQGTKIQNHYYCTNIIFHLSVQRQLIISTCP*

>peptide 3 (31 aa)
MVMRPSPKEPTLMGVPAIAGEEIAMVEAAIA*

>peptide 4 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30556492
CCCTTAAAATCTGACAAATCAATGATTAACCACCAGGGAACAAAAATACAAAATCACTACTATTGCACAAACATCATCTTTCATCTTAGTGTACAACGCC
AACTCATCATCTCGACCTGCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCGGCAGCTTGCAGCATCAATGAATCCACGTACGCCCCCTCCGGAA
GACAATGAAGTTGCAGAGCGGATGGAGCTTAGTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGTTCTCGAGTGGGCCCTTGCCGGTGACGATGGCCTGGA
CGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCCAGGCCGAGGGG
GTCGAAGATGCTCTGGGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCG
CCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCAAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCACGGTTCT
TGGCGAAGGTCTCGGGGTCAGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGG
GCCGAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCG
AAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCCATGGTGGAGGCGGCCATTGCGTGAGGCGAGGGAGAGTTGCTGAGACCGG
TCGCTAGCTGCTTGCTG