CANTATAdb - search

Detailed information on CNT30251114

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 8e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696274	Avena sativa	Oryza sativa	57.61	61.62	89.2	602	forward
CNT30299998	Avena sativa	Triticum aestivum	63.25	65.12	92.28	661	forward
CNT30554984	Avena sativa	Oryza glaberrima	57.61	53.56	89.37	602	forward
CNT30665325	Avena sativa	Triticum dicoccoides	64.5	77.56	94.66	674	forward
CNT3013606	Avena sativa	Zea mays	58.47	59.38	90.51	611	forward
CNT30129909	Avena sativa	Corymbia citriodora	52.25	75.1	90.84	546	forward
CNT30345519	Avena sativa	Eragrostis tef	32.82	59.14	94.17	343	forward
CNT30363113	Avena sativa	Sorghum bicolor	58.76	62.34	90.23	614	forward
CNT30596906	Avena sativa	Oryza meridionalis	52.54	56.08	90.16	549	forward
CNT30103465	Avena sativa	Oryza rufipogon	57.61	52.58	88.87	602	forward
CNT30581184	Avena sativa	Echinochloa crusgalli	56.75	66.55	93.09	593	forward
CNT30117623	Avena sativa	Oryza nivara	57.61	63.17	88.7	602	forward

Expression of CNT30251114

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (36 aa)
MVMRPSPKGEALEAFMGVPAIAGEESAMVEAAICSL*

>peptide 3 (38 aa)
MENMARRPFLSSLTLSSAKASGSSARMLWAWTRLGLPR*

Sequence

>CNT30251114
TATAAGGTTGTTCGGTGAAAACTTAAACTGCTTGGACTTTCAGAAAGTTCAGAGATCTTAAGTAGTATTGACATTCAGAGAAACCAATAGTTAAGCAGAA
GAAGAAAGATTCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTGGACTCGCCTTAACATGATCCATCAGTGACG
ACACACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCGAACTAAGCTCTTACTTGCC
GGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGACCCTTGCCGGTGACGATGGCC
TGAACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGATGC
TCTGGGCGTGGACGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGAC
GCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTC
TCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTAGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGA
GCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGCCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGC
CCTGGAGGCCTTCATGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTTGCTCGCTCTGATCGAGGTGAGGTGTGCTTCGA
GTGAGCTCGGGTGGTAGGAGTTGCTGGTGTCTGTTGGTGCTGTGG