Detailed information on CNT30574023


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628902Vitis viniferaVigna unguiculata39.2149.2182.11218forward
CNT30145737Vitis viniferaMedicago truncatula32.1929.0683.24179forward
CNT3016767Vitis viniferaZea mays66.1948.6879.62368forward
CNT30608057Vitis viniferaGossypium raimondii75.5470.8381.43420forward
CNT3067990Vitis viniferaLeersia perrieri39.5757.7481.36220forward
CNT3027877Vitis viniferaTheobroma cacao71.0410079.49395forward
CNT3035160Vitis viniferaCucumis melo66.3773.2182.11369forward
CNT30335475Vitis viniferaCynara cardunculus62.9526.9482.57350forward

Expression of CNT30574023

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CNLVMSDCKGLMEIVLDCWENMPVMGCILLRKDYN*

>peptide 2 (78 aa)
MLDCNQERSGYMPERWGCMMERLDYKKVRLGYRMVRLGYRKVRWGCKQEKWGCMQEKWGCMRVMLGCRQEKLDCNLEK*

>peptide 3 (29 aa)
MWGCSWGMWGCSWVKWGCILGRLDCSQEK*

Sequence

>CNT30574023
CTGTAATTTGGTGATGTCGGACTGTAAGGGCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGAT
TATAACTAGGTGATGTAGGGCTGTAGCTTGGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTCGGGCTATATGCCGGAGAGGT
GGGGCTGTATGATGGAGAGGTTGGACTATAAGAAGGTGAGGTTGGGCTATAGGATGGTGAGGTTGGGCTATAGGAAGGTGAGGTGGGGCTGTAAGCAGGA
GAAGTGGGGCTGTATGCAGGAGAAGTGGGGCTGTATGAGGGTGATGTTGGGCTGTAGACAGGAGAAGTTGGACTGTAACTTGGAGAAGTAGGACTGTAGC
TTGGAGATGTAGGACTGTAACTGGGAGATGTGGGGCTGTAGCTGGGGGATGTGGGGCTGTAGCTGGGTGAAGTGGGGCTGTATCCTGGGGAGGTTGGACT
GTAGCCAGGAGAAGTAGGGCTATAACCAGGAGATGATGGACTATATCCTGGAGAAG