Detailed information on CNT30676168


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30551403Setaria viridisOryza brachyantha19.7927.2691.56154forward

Expression of CNT30676168

Peptides detected in this lncRNA

>peptide 1 (46 aa)
KPHILQVSQLSETEELRASIWWNAGTDPSGKPIYRSMPSILSSTSE*

>peptide 2 (91 aa)
MWHLQLPEQAQMPCASPSCLPLERHCRMQRTCGSGTCPGAASHRTLMHLRTPLLLPLLVGHPAPLPAPGHACAHSSSLLAHLVQRPSSLRGP

>peptide 3 (56 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSDPDAFENTLVAASLSGTPSSSACSWACLRT*

>peptide 4 (49 aa)
NHTFYKCLNSVRQKSSELLFGGMLELIHRANQFTGQCPQSCLQPLSRAP*

Sequence

>CNT30676168
AAACCACACATTCTACAAGTGTCTCAACTCAGTGAGACAGAAGAGCTCCGAGCTTCTATTTGGTGGAATGCTGGAACTGATCCATCGGGCAAACCAATTT
ACCGGTCAATGCCCTCAATCTTGTCTTCAACCTCTGAGTAGAGCTCCCTGAGCTTTTCCAAATTCTCCTCTGACCCTCTTCCTCATCGCCTCATCTTCAA
TGAATGTGGAATTTGCCTCCTCATAAACCCAGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTGTGAGCCGCTTCTCGATCTCTCTAAC
TCCCTCATAGCCGCTCTTCATCATCCCCTCATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAGTGTTCTCACCTGT
GCATTTGCTGTGGTTGTATCTGCTATGTAAGAGGCAGGTGCCCGTCCATCCTTCCGCAGCCCTTGCACCAGCTTTGTTGGGTCCGAGTCGAAGTTCTGGA
ATGTGGCATCTGCAGTTGCCAGAGCAAGCTCAAATGCCTTGCGCTTCTCCTTCATGCCTGCCCCTGGAGCGTCACTGTCGAATGCAAAGGACTTGCGGCT
CAGGTACATGTCCTGGAGCTGCTTCTCATCGGACCCTGATGCATTTGAGAACACCCTTGTTGCTGCCTCTCTTAGTGGGACACCCAGCTCCTCTGCCTGC
TCCTGGGCATGCTTGCGCACATAGTTCATCTCTACTGGCTCATCTAGTTCAGCGACCATCTTCACTGCGCGGTCCAAC