Detailed information on CNT3050759


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315642Cucumis sativusCorylus avellana20.2612.8688.7162forward
CNT30501219Cucumis sativusCoffea canephora20.2619.5691.9462reverse complement
CNT30381752Cucumis sativusManihot esculenta20.9220.9287.564forward
CNT30504899Cucumis sativusNicotiana attenuata20.5920.6690.4863forward
CNT3045640Cucumis sativusPrunus dulcis20.5920.4590.4863forward
CNT3093739Cucumis sativusSolanum tuberosum20.2620.3987.162forward
CNT30128358Cucumis sativusCorymbia citriodora20.5922.8388.8963reverse complement
CNT30715637Cucumis sativusMalus domestica golden18.632087.7257reverse complement
CNT30153271Cucumis sativusPrunus persica20.2620.4691.9462forward
CNT30704539Cucumis sativusPrunus avium20.595.8888.8963reverse complement

Expression of CNT3050759

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PSPVALAYDPSGGVILMERKVSSWWAGSVVASFWAARFKHGESHGA*

>peptide 2 (61 aa)
MEKAMELRRRPKYHGLVKRGRTREAGFTEQRQLPSPCSGRITVRVRRVQFVPVGCPSPNHPS

Sequence

>CNT3050759
GCCGAGTCCGGTTGCGCTGGCTTATGACCCGAGTGGGGGCGTTATATTGATGGAACGGAAGGTTTCATCCTGGTGGGCTGGATCTGTCGTGGCTTCATTC
TGGGCCGCCCGTTTCAAGCATGGAGAAAGCCATGGAGCTTAGGCGGAGGCCCAAGTACCATGGGCTTGTAAAGCGGGGGAGAACGCGTGAGGCTGGCTTC
ACAGAGCAACGTCAACTTCCCTCTCCTTGCAGTGGAAGGATAACGGTCCGTGTCCGTCGGGTCCAATTTGTCCCAGTGGGGTGCCCCTCACCGAACCATC
CTTCTT