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Detailed information on CNT30628639


BLAST search results

BLAST vs Swiss-Prot:
sp|P25856|G3PA1_ARATH, E-value = 1e-86

BLAST vs NONCODE:
NONMTRT001777, E-value = 6e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523847Vigna unguiculataSetaria italica29.8221.1881.13212forward
CNT30524759Vigna unguiculataPhaseolus vulgaris44.4425.8495.25316forward
CNT30196808Vigna unguiculataPisum sativum10.4131.2285.1474forward
CNT30490066Vigna unguiculataOlea europaea36.9929.4879.09263forward
CNT30711851Vigna unguiculataGlycine max80.3149.5289.49571forward
CNT30289015Vigna unguiculataTriticum aestivum29.2542.6281.25208forward
CNT30386656Vigna unguiculataTriticum turgidum19.9726.4484.51142forward
CNT3088037Vigna unguiculataVigna radiata78.3441.4493.72557forward
CNT30541340Vigna unguiculataBrassica napus19.1321.2585.29136forward
CNT30146657Vigna unguiculataMedicago truncatula50.7732.9186.43361forward
CNT30658162Vigna unguiculataTriticum dicoccoides19.9725.4984.51142forward
CNT30445641Vigna unguiculataSaccharum spontaneum12.9431.6283.792forward
CNT304088Vigna unguiculataZea mays24.0524.7582.46171forward
CNT30648504Vigna unguiculataRosa chinensis21.5221.0283.01153forward
CNT30215929Vigna unguiculataHelianthus annuus41.6331.3982.43296forward
CNT30680437Vigna unguiculataTriticum urartu33.1945.380.93236forward
CNT30346859Vigna unguiculataEragrostis tef16.1726.0283.48115forward
CNT30119544Vigna unguiculataCitrus clementina35.582281.82253forward
CNT30498309Vigna unguiculataDigitaria exilis19.5523.7282.01139forward
CNT30558465Vigna unguiculataPanicum hallii8.8631.590.4863forward

Expression of CNT30628639

Peptides detected in this lncRNA

>peptide 1 (49 aa)
ESTVEDTSVHLKSTETRGSSHTERIPFSSFSALSLNAAFTSSAKVFFET*

>peptide 2 (49 aa)
MPFSFPFRVGSTSATAFAAPVEVGTMFRAAALARLRSRWLASRSLWSPV*

>peptide 3 (40 aa)
MLLSSPHKNHFPRNMFGCKPERIFTPSLLETVKSSFLKRL*

Sequence

>CNT30628639
GGAGTCAACGGTTGAGGACACATCAGTGCACCTGAAGTCAACAGAAACAAGAGGCTCATCACACACTGAGAGGATTCCCTTCAGCTCCTTCTCTGCACTC
TCTCTGAACGCTGCATTCACTTCTTCTGCAAAGGTCTTCTTTGAAACCTGAACAACAAGGTCCACCACTGACACATTTGGGGTTGGCACACGCAGTGCAA
TGCCGTTCAGTTTCCCTTTCAGGGTTGGCAGCACAAGCGCCACCGCCTTTGCTGCTCCGGTTGAAGTGGGCACAATGTTCAGAGCTGCGGCCCTAGCACG
CCTCAGGTCACGGTGGCTCGCGTCGAGAAGCCTCTGGTCTCCGGTGTAGGAGTGAGTGGTGGTCATGGCATTGCTGATGATGGGTTCATCTGCGCTGTAA
TCAAATTCATTGACACCGACCACGTAGGTGGGGATGTCTCCTTTACCAGGTGCTGTGATGAGCACTTTCTTAGCTCCTGCTTGAATGTGTTTCCCAGCAC
CTTCTCTGTCTACGAACACCCCAGTTCCTTCAATCACCAAGTCTATCCCCAACTCCCTGCAATAAAACCACACACTCATCTTCACATGTTACTCTCTTCT
CCTCACAAAAACCACTTTCCTAGGAACATGTTTGGATGCAAACCAGAAAGAATTTTCACACCTTCTCTACTTGAAACTGTGAAAAGTTCTTTCTTAAAGA
GACTCTAATTG