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Detailed information on CNT304088


BLAST search results

BLAST vs Swiss-Prot:
sp|P09315|G3PA_MAIZE, E-value = 5e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676468Zea maysSetaria viridis43.272891.64299forward
CNT30523847Zea maysSetaria italica42.9829.6793.27297forward
CNT30628639Zea maysVigna unguiculata24.623.9182.35170forward
CNT30289015Zea maysTriticum aestivum34.7349.1893.75240forward
CNT30221551Zea maysHordeum vulgare60.4946.5587.8418forward
CNT30385999Zea maysTriticum turgidum35.1745.7693.83243forward
CNT30244006Zea maysAvena sativa34.1557.8487.71236forward
CNT30658162Zea maysTriticum dicoccoides35.1743.6393.83243forward
CNT30465116Zea maysSaccharum spontaneum36.4744.9298.02252forward
CNT30680437Zea maysTriticum urartu30.8240.8895.77213forward
CNT30346859Zea maysEragrostis tef24.4638.2493.49169forward
CNT30365811Zea maysSorghum bicolor64.5469.4789.46446forward
CNT30572796Zea maysVitis vinifera17.6623.1186.89122forward
CNT30498309Zea maysDigitaria exilis35.4641.8191.02245forward
CNT30594547Zea maysEragrostis curvula23.5933.0695.09163forward
CNT30558465Zea maysPanicum hallii14.765196.08102forward

Expression of CNT304088

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSPLPGAVMSTFLAPAWMCFPAPSRSTKTPVPSMTRSMPSSPHGRLLGLRSDTTL

>peptide 2 (72 aa)
METFGRYIRTTSPKRVNFTESESFRGESQSPVEGEELQSAITMQRFTSTGWRRCQRGRRRRRSGWAPGARSR*

>peptide 3 (66 aa)
MSARSTTETFGVGTRSAIPLSLPLRLGSTSETALAAPVDVGTMLSAAARARRRSRWLASSSLWSPV*

Sequence

>CNT304088
TGCACTTCTATATTGATTATTGAATGAAGAACTTGTATGTTTGTTTCAACTCTAGAGTTGACTAATAATTGAAATCCAATGGAAACATTTGGCCGGTATA
TTCGGACGACCTCGCCGAAACGGGTGAATTTCACCGAAAGTGAGTCATTTCGGGGTGAATCCCAAAGCCCTGTGGAGGGTGAGGAGTTACAAAGTGCTAT
TACAATGCAACGCTTCACTTCCACTGGTTGGCGCAGATGTCAGCGAGGTCGACGACGGAGACGTTCGGGGTGGGCACCCGGAGCGCGATCCCGTTGAGCT
TGCCCTTGAGGTTGGGGAGCACCAGCGAGACGGCCTTGGCGGCGCCGGTGGACGTGGGCACGATGTTGAGCGCGGCGGCGCGGGCGCGGCGCAGGTCGCG
GTGGCTCGCGTCCAGCAGCCTCTGGTCGCCGGTGTAGGAGTGGGTGGTGGTCATGGAGGCGTTGCTGATGATGGGCTCGTCGGGGTTGTACTGGTCGGCA
TTGACGCCGACGACGTAGGTGGGGATGTCGCCCTTGCCGGGCGCCGTGATGAGCACCTTCTTGGCCCCCGCCTGGATGTGCTTCCCCGCGCCCTCGCGGT
CGACGAAGACGCCGGTGCCCTCGATGACGAGGTCGATGCCGAGCTCGCCCCACGGCAGGTTGCTGGGGTTGCGGTCGGACACGACCTTGAT