Detailed information on CNT30676563


BLAST search results

BLAST vs Swiss-Prot:
sp|P85954|G3PC_PSEMZ, E-value = 4e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30346859Setaria viridisEragrostis tef68.5361.0985.93270forward
CNT30498309Setaria viridisDigitaria exilis31.4721.1689.52124forward
CNT30594547Setaria viridisEragrostis curvula76.961.4679.54303forward

Expression of CNT30676563

Peptides detected in this lncRNA

>peptide 1 (71 aa)
NLQKNLATDSIYYKSALYSVCDFLCRKSIILRPWTMKNRRREREKIKGIVGSLGPRFLITNYHQGRPWGKF*

>peptide 2 (35 aa)
IYKRTLQQIVYITNLHYTAFAISFAGSRLYSVPGQ*

>peptide 3 (30 aa)
MRGFTSNCWRQCQLGRRPSASSPTRCRTTR*

Sequence

>CNT30676563
AATCTACAAAAGAACCTTGCAACAGATAGTATATATTACAAATCTGCATTATACAGCGTTTGCGATTTCCTTTGCCGGAAGTCGATTATACTCCGTCCCT
GGACAATGAAAAATCGGAGAAGGGAGAGAGAGAAAATAAAAGGAATTGTTGGGAGTTTGGGTCCTCGATTTCTCATTACAAATTATCATCAGGGAAGACC
CTGGGGAAAATTTTGAAGCCGAGGATGGGTTATTACAATGCGAGGCTTCACTTCCAATTGTTGGCGACAATGTCAGCTAGGTCGACGACCCTCTGCGAGT
AGCCCCACTCGTTGTCGTACCACGCGATGACCTTGACCATGTCGTCGCCCATGACCATGGAGTGGGTGGTGGTCATGGTGCCCTTGATGATGCC