Detailed information on CNT30524158


BLAST search results

BLAST vs Swiss-Prot:
sp|P09672|G3PA_SINAL, E-value = 5e-42

BLAST vs NONCODE:
NONATHT000140, E-value = 6e-07

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676190Setaria italicaSetaria viridis55.796.7799.52420forward
CNT30698911Setaria italicaQuercus lobata14.5940.8983.64110forward
CNT30729008Setaria italicaCorchorus capsularis29.1841.2882.27220forward
CNT30524716Setaria italicaPhaseolus vulgaris22.2821.4683.33168forward
CNT30628637Setaria italicaVigna unguiculata21.0918.5584.28159forward
CNT30712586Setaria italicaGlycine max22.2824.8984.52168forward
CNT30385588Setaria italicaTriticum turgidum8.3622.595.2463forward
CNT30243463Setaria italicaAvena sativa37.1453.5491.79280forward
CNT302683Setaria italicaZea mays25.3347.2893.19191forward
CNT30346859Setaria italicaEragrostis tef35.5460.6385.82268forward
CNT30365811Setaria italicaSorghum bicolor28.7833.892.17217forward
CNT30622203Setaria italicaCajanus cajan21.3518.783.85161forward
CNT30498309Setaria italicaDigitaria exilis17.2422.1889.23130forward
CNT30594547Setaria italicaEragrostis curvula39.9261.0580.07301forward
CNT30558465Setaria italicaPanicum hallii8.493298.4464forward

Expression of CNT30524158

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MKNRRRERENKRNCWEFGSSISHYKLSSGKTLGKILKPRMGYYNARLHFQLLATMSARSTTLCE*

>peptide 2 (60 aa)
MTLTMSSPMTMVSEASTVEDTSEHLKSTDTSGASQTSRMPASSLAALSRWLASSSLWSPV*

>peptide 3 (61 aa)
MVRRLLDASRVVDGDDLERRVVAPVPAAEEVAPDAAEPVDRHLQLGLRRRPPRPATHWIVVS

>peptide 4 (30 aa)
MRGFTSNCWRQCQLGRRPSASSPTRCRTTR*

>peptide 5 (49 aa)
MAMTSSGESSRPCQQRRKLRPMRPNPLIATFSLASVGARLGPPLTGSSCP

Sequence

>CNT30524158
GGCTCTAATTTCATTTAGCCATCTTTGAACAAATAAAGGGTTTGAAATCTACAAAAGAACCTTGCAACAGATAGTATATATTACAAATCTGCATTATACA
GCGTCTGCGATTTCCTTTGCCGGAAGTCGATTATACTCCGTCCCTGGACAATGAAAAATCGGAGAAGGGAGAGAGAAAATAAAAGGAATTGTTGGGAGTT
TGGGTCCTCGATTTCTCATTACAAATTATCATCAGGGAAGACCCTGGGGAAAATTTTGAAGCCGAGGATGGGTTATTACAATGCGAGGCTTCACTTCCAA
TTGTTGGCGACAATGTCAGCTAGGTCGACGACCCTCTGCGAGTAGCCCCACTCGTTGTCGTACCACGCGATGACCTTGACCATGTCGTCGCCCATGACCA
TGGTGAGCGAGGCGTCGACGGTGGAGGACACGTCGGAGCACCTGAAGTCGACGGACACGAGCGGGGCGTCGCAGACCTCGAGGATGCCGGCGAGCTCGTT
GGCGGCGCTGTCGCGGTGGCTGGCGTCCAGCAGCCTCTGGTCACCGGTGTAGGAGTGGGTGGTGGTCATGGTGAGACGCCTGCTTGACGCCTCCCGTGTC
GTTGATGGCGATGACCTCGAGCGGCGAGTCGTCGCGCCCGTGCCAGCAGCGGAGGAAGTTGCGCCCGATGCGGCCGAACCCGTTGATCGCCACCTTCAGC
TTGGCCTCCGTCGGCGCCCGCCTAGGCCCGCCACTCACTGGATCGTCGTGTCCG