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Detailed information on CNT30289015


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628639Triticum aestivumVigna unguiculata42.6229.2581.25208forward
CNT30711851Triticum aestivumGlycine max42.4217.9580.19207forward
CNT30221551Triticum aestivumHordeum vulgare67.0136.4194.8327forward
CNT304088Triticum aestivumZea mays49.1834.7393.75240forward
CNT30215929Triticum aestivumHelianthus annuus42.6222.0678.85208forward
CNT30365811Triticum aestivumSorghum bicolor44.4733.893.09217forward
CNT30330803Triticum aestivumDioscorea rotundata22.7517.9683.78111forward
CNT30498309Triticum aestivumDigitaria exilis49.1840.9691.67240forward

Expression of CNT30289015

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MAGENFERSHFTGQCRRPAFTSIGWRRCRRGRPRTRWGWAPGARSR*

>peptide 2 (84 aa)
MPPSGVHFHWLATMSARSTTDTLGVGTRSAIPLSLPLRLGSTSATALAAPVEVGTMLSAAARARRRSRWLASSSLWSPVYEWVVV

>peptide 3 (62 aa)
ANDSIYYRCTALRLPLQEVYYNPCLDTEKSEKEKRRTRKERKKKKLLGVRYSEFSLQRIDHP*

Sequence

>CNT30289015
GCAAACGATAGTATATATTACAGATGCACAGCGTTGAGACTTCCTTTGCAGGAAGTCTATTATAATCCGTGTCTGGACACTGAAAAATCAGAGAAAGAAA
AAAGAAGAACAAGAAAAGAAAGGAAAAAAAAGAAGCTGTTGGGAGTTCGATACTCTGAATTCTCATTACAAAGAATCGATCATCCGTGACGATGGCTGGG
GAAAATTTCGAGAGGAGTCACTTCACAGGGCAATGCCGCCGTCCGGCGTTCACTTCCATTGGTTGGCGACGATGTCGGCGAGGTCGACCACGGACACGTT
GGGGGTGGGCACCCGGAGCGCGATCCCGTTGAGCTTGCCCTTGAGGTTGGGCAGCACCAGCGCCACGGCCTTGGCCGCGCCGGTGGAGGTGGGCACGATG
TTGAGCGCCGCGGCGCGGGCACGGCGCAGGTCGCGGTGGCTCGCGTCCAGCAGCCTCTGGTCGCCGGTGTATGAGTGGGTGGTGGTCA