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Detailed information on CNT3024649


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021011Populus trichocarpaCitrullus lanatus24.8313.468875forward
CNT30526711Populus trichocarpaPhaseolus vulgaris26.1625.9989.8779forward
CNT30506770Populus trichocarpaNicotiana attenuata24.1723.9390.4173forward
CNT30634223Populus trichocarpaCapsicum annuum24.525.3489.1974reverse complement
CNT3096120Populus trichocarpaSolanum tuberosum20.5320.3991.9462forward
CNT30238127Populus trichocarpaBrassica oleracea23.1822.9591.4370forward
CNT30510805Populus trichocarpaSolanum lycopersicum20.8620.6692.0663forward
CNT30623316Populus trichocarpaDaucus carota23.5123.3690.1471forward
CNT30478496Populus trichocarpaArabidopsis halleri22.8532.2489.8669forward
CNT30175714Populus trichocarpaVigna angularis24.524.3490.5474forward

Expression of CNT3024649

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LSSVAWACNSSEGKKVMELCFGTEGRIWCGFLLACPFQAKSEPC*

Sequence

>CNT3024649
GCTGAGCTCAGTAGCGTGGGCTTGTAACTCAAGTGAGGGCAAGAAGGTGATGGAACTTTGTTTCGGCACAGAAGGTCGGATTTGGTGTGGCTTCTTACTG
GCCTGCCCGTTCCAAGCCAAGAGTGAGCCATGCTAACCAAGCGAAGGCCTGGTTGGCCTGTCTCCTGAAGTGAAGGGCACTGCGTGAGGCTGGTTTCACA
GAGCAACGATCACCTTCCTCTCTTGGCAGTGGAAGGATAACAGGCTGGTGCCAATCAGATCCGTATGGCCTAATGGGCTGTTCCAACTGGACCATCATTT
TT