« Back to Aegilops tauschii search


Detailed information on CNT30439990


BLAST search results

BLAST vs Swiss-Prot:
sp|P08963|CB22_HORVU, E-value = 4e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188325Aegilops tauschiiSecale cereale59.2753.6495.4457forward
CNT30297854Aegilops tauschiiTriticum aestivum66.1558.4298.43510forward
CNT30225034Aegilops tauschiiHordeum vulgare34.544.2695.49266forward
CNT30395272Aegilops tauschiiTriticum turgidum66.1553.9797.84510forward
CNT30250161Aegilops tauschiiAvena sativa56.9463.2691.12439forward
CNT30664789Aegilops tauschiiTriticum dicoccoides65.7656.1598.42507forward
CNT30684745Aegilops tauschiiTriticum urartu98.0596.5595.5756forward
CNT30369221Aegilops tauschiiOryza glumipatula36.7142.2491.52283forward
CNT30582720Aegilops tauschiiEchinochloa crusgalli49.2954.7690380forward
CNT30603508Aegilops tauschiiOryza punctata34.1133.6789.35263forward

Expression of CNT30439990

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MHQAGVAEVEHAVGAVPRAAGRRHLGLARRLAHGDAALPEGRRPGGLHRCARHRRGGERHGRGRHRALRTR*

>peptide 2 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30439990
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
ATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAG
GCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCC
ACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATCAGCACCACCTGGCAGGCCCAGATGGCAAGGATGCTCTGCGCATGCA
CCAGGCTGGGGTTGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGAT
GCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGC
GTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTAGGAGGCGCTGGTGGTCGTTGG