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Detailed information on CNT30188325


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 2e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Secale cerealeOryza sativa42.6138.7893.11363forward
CNT30671434Secale cerealeSetaria viridis35.839.6192.13305forward
CNT30300806Secale cerealeTriticum aestivum72.0775.1595.44614forward
CNT30394515Secale cerealeTriticum turgidum73.2475.9194.71624forward
CNT30589400Secale cerealeMusa acuminata43.1953.890.76368forward
CNT30439990Secale cerealeAegilops tauschii53.6459.2795.4457forward
CNT30250317Secale cerealeAvena sativa62.9169.1692.16536forward
CNT30129910Secale cerealeCorymbia citriodora37.0950.1691.46316forward
CNT30684745Secale cerealeTriticum urartu55.5260.4195.98473forward
CNT30369213Secale cerealeOryza glumipatula46.955090.25400forward
CNT30556832Secale cerealePanicum hallii40.1459.6993.57342forward

Expression of CNT30188325

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

>peptide 2 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30188325
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGG
CGAGGTGGTCGGCGAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGC
GGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACGAGGCTGGGGTTGC
CGAGGTAGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCC
GAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGC
TTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTT