CANTATAdb - search

Detailed information on CNT30250161

BLAST search results

BLAST vs Swiss-Prot:
sp|P04782|CB24_PETSP, E-value = 6e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30299285	Avena sativa	Triticum aestivum	46.11	47.55	91.88	320	forward
CNT30225034	Avena sativa	Hordeum vulgare	38.47	44.43	93.26	267	forward
CNT30439990	Avena sativa	Aegilops tauschii	63.26	56.94	91.12	439	forward
CNT30664426	Avena sativa	Triticum dicoccoides	47.12	44.73	92.66	327	forward
CNT30684745	Avena sativa	Triticum urartu	64.99	57.6	90.02	451	forward
CNT30582720	Avena sativa	Echinochloa crusgalli	54.32	54.32	89.66	377	forward

Expression of CNT30250161

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

Sequence

>CNT30250161
GATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCATCATTCAGCAATGAA
GTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCAGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACAGGGTCGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCT
GCCTCCGGGGTAGAGCGGGTCGACGATCTCACCCAGCGGTCCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGACAGGCCCAGATG
GCGAGGATACTCTGGGCGTGTACGAGGCTGGGGTTGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGG
CGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGT
GGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTGT