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Detailed information on CNT30582720


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225034Echinochloa crusgalliHordeum vulgare38.1844.0990.57265forward
CNT30439990Echinochloa crusgalliAegilops tauschii54.7649.2990380forward
CNT30250161Echinochloa crusgalliAvena sativa54.3254.3289.66377forward
CNT30603508Echinochloa crusgalliOryza punctata38.0433.893.18264forward

Expression of CNT30582720

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 2 (31 aa)
VERKEKKTSWVGRDTIQSDNEHCKSFSVEPS*

>peptide 3 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 4 (38 aa)
WKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

Sequence

>CNT30582720
GTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTA
CACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGC
ACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGT
CGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCC
CATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGG
CTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGA
ACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGCAG