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Detailed information on CNT30664789


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187050Triticum dicoccoidesSecale cereale69.168.6595.35624forward
CNT30439990Triticum dicoccoidesAegilops tauschii56.1565.7698.42507forward
CNT30251696Triticum dicoccoidesAvena sativa60.862.8991.8549forward
CNT30685649Triticum dicoccoidesTriticum urartu101.6697.7697.6918forward
CNT30369221Triticum dicoccoidesOryza glumipatula42.4157.1691.38383forward
CNT30582317Triticum dicoccoidesEchinochloa crusgalli53.9355.3489.53487forward
CNT30117588Triticum dicoccoidesOryza nivara53.8240.2789.71486forward

Expression of CNT30664789

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (55 aa)
MSTTWQAQMARMLCACTRLGLPSAPSMAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (54 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGG

Sequence

>CNT30664789
ACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACA
TGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTC
GGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTT
GATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCC
AGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGT
TGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCA
GCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTG
GACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCG
CCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGG
TCG