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Detailed information on CNT30395272


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 4e-129

BLAST vs NONCODE:
NONBNAT007398, E-value = 2e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Triticum turgidumOryza sativa48.9953.3494.17463forward
CNT30186721Triticum turgidumSecale cereale42.8640.7998.27405forward
CNT30439990Triticum turgidumAegilops tauschii53.9766.1597.84510forward
CNT30250555Triticum turgidumAvena sativa68.3663.991.18646forward
CNT30666199Triticum turgidumTriticum dicoccoides93.8692.9897.97887forward
CNT30470687Triticum turgidumSaccharum spontaneum49.2158.3493.55465forward
CNT3010578Triticum turgidumZea mays49.3175.491.85466forward
CNT30685729Triticum turgidumTriticum urartu102.2298.3795.65966forward
CNT30345510Triticum turgidumEragrostis tef62.3370.0491.51589forward
CNT30596867Triticum turgidumOryza meridionalis49.7443.7693.4470forward
CNT30369260Triticum turgidumOryza glumipatula55.4551.7389.12524forward
CNT30103295Triticum turgidumOryza rufipogon49.6338.5793.39469forward
CNT30574779Triticum turgidumOryza barthii61.0671.5990.47577forward
CNT30582821Triticum turgidumEchinochloa crusgalli49.3149.8994.21466forward
CNT30117539Triticum turgidumOryza nivara61.5949.2890.55582forward

Expression of CNT30395272

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAPAIACYSLALLRVS*

>peptide 2 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30395272
CAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGC
AACATCTATCAGTCCGGACTACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGC
CTAGAGGTTGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGAT
CTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGC
GGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGC
CGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAA
GACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGCGGGCCGAGG
TAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCG
CCGCCCTGGAGGCCTTCACCGGGGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGCCCGCCATTGCGTGCTACTCGCTAGCTTTGCTTCGGGT
GAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGCTGT