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Detailed information on CNT30603508


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 4e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299285Oryza punctataTriticum aestivum32.9138.1991.44257forward
CNT30225034Oryza punctataHordeum vulgare40.8553.0892.16319forward
CNT30395039Oryza punctataTriticum turgidum40.8545.3892.48319forward
CNT30589596Oryza punctataMusa acuminata29.0750.5688.55227forward
CNT30552192Oryza punctataOryza glaberrima60.6957.1192.83474forward
CNT30439990Oryza punctataAegilops tauschii33.6734.1189.35263forward
CNT30664426Oryza punctataTriticum dicoccoides40.8543.6492.16319forward
CNT3011397Oryza punctataZea mays33.0343.9588.76258forward
CNT30685015Oryza punctataTriticum urartu42.3847.4989.12331forward
CNT30582720Oryza punctataEchinochloa crusgalli33.838.0493.18264forward
CNT30556471Oryza punctataPanicum hallii28.4344.5894.14222forward

Expression of CNT30603508

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTWQPQMARMLCAWIRLGLPR*

>peptide 2 (41 aa)
VRLILTSRFVFLHVIIRVRTFPMDHGYSIPPGKLISQEQIR*

>peptide 3 (48 aa)
MRPSPNTLALATALPARAGEESAMVDAAIDASLGEMATGMLGMCLSSS*

>peptide 4 (65 aa)
RSSDIDVSFCVFACDYSSPYVSHGPWVFHTARQTDFPGTNQVKLFYTIRSIVLSSTNQITLFYTI*

Sequence

>CNT30603508
TCGTTCGTCTGATATTGACGTCTCGTTTTGTGTTTTTGCATGTGATTATTCGAGTCCGTACGTTTCCCATGGACCATGGGTATTCCATACCGCCAGGCAA
ACTGATTTCCCAGGAACAAATCAGGTAAAATTATTTTACACAATCAGGTCCATTGTCCTTTCATCAACCAACCAGATAACATTATTTTACACAATCTGAA
CGAACGAAGCAAATATTCGGGTACGCGGAAAGTGGAGAACATATATCGCTCGCGCAAAAGCTTGTCTCACCGCAGCCTGCCTGAAGCAATGGAACTCACC
GCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGTGGGTC
GAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGCAACCC
CAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTTCCGGACGCGGCGGGCTTGG
GCTTGGCCGCCGACTTGCGCATCGTGATGCGGCCCTCGCCGAACACCTTGGCGTTGGCGACCGCCTTGCCGGCGAGGGCAGGGGAGGAGAGTGCCATGGT
GGACGCCGCCATTGACGCGAGCCTTGGAGAAATGGCCACAGGAATGCTTGGAATGTGTCTTTCGAGCTCGTGAGCTGTGGT