« Back to Triticum aestivum search


Detailed information on CNT30297854


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 4e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439990Triticum aestivumAegilops tauschii58.4266.1598.43510forward
CNT30684671Triticum aestivumTriticum urartu61.1755.0598.31534forward
CNT30345523Triticum aestivumEragrostis tef49.3747.8492.11431forward
CNT30362899Triticum aestivumSorghum bicolor49.3747.7387.94431forward
CNT30369221Triticum aestivumOryza glumipatula31.3940.992.34274forward

Expression of CNT30297854

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLA

>peptide 2 (39 aa)
MSTTWQAQMARMLCACTRLGSRFLAKVSGSADSPAVSQP*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 4 (31 aa)
LFRQLQCLTLRGSERQVVNQKNRDALINLRK*

Sequence

>CNT30297854
AATTATTCAGACAACTTCAGTGTTTGACATTGAGAGGTTCAGAGAGACAAGTAGTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCC
AGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCA
GAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCC
GGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCG
GGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGG
CGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGA
CAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAG
CCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCA
CCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGG