Detailed information on CNT30394677


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0WV25|TBA4_ARATH, E-value = 2e-41

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677715Triticum turgidumSetaria viridis90.9436.585.44261forward
CNT30237104Triticum turgidumBrassica oleracea48.7843.2185140forward
CNT30555279Triticum turgidumOryza glaberrima78.472.1287.11225forward
CNT3041150Triticum turgidumChlamydomonas reinhardtii65.1641.0186.63187forward
CNT30210906Triticum turgidumHelianthus annuus65.5172.0380.85188forward
CNT30620135Triticum turgidumCajanus cajan52.9648.5684.87152forward
CNT30360524Triticum turgidumLactuca sativa88.8539.7882.35255forward
CNT30148523Triticum turgidumBrachypodium distachyon70.0331.1693.03201forward

Expression of CNT30394677

Peptides detected in this lncRNA

>peptide 1 (94 aa)
LRDEAVQVGVDGLVVEQDGDIGVLQQGVGGQHTVVGLDHRGRHLRGWVHGEPELGLLSIVHGQALEEERPEPRPGSTADGVEDQEALQASAVVGQ

>peptide 2 (50 aa)
PERRGGSGWCRWPRCRAGWRHRCAPAGSGWTAHCCRARPQRSTPEGMGTR*

Sequence

>CNT30394677
ACCTGAGAGACGAGGCGGTTCAGGTTGGTGTAGATGGCCTCGTTGTCGAGCAGGATGGAGACATCGGTGTGCTCCAGCAGGGAGTGGGTGGACAGCACAC
TGTTGTAGGGCTCGACCACAGAGGTCGACACCTGAGGGGATGGGTACACGGTGAACCCGAGCTTGGACTTCTTTCCATAGTCCACGGACAGGCGCTCGAG
GAGGAGCGACCCGAGCCCAGACCCGGTTCCACCGCCGACGGCGTTGAAGACCAGGAAGCCCTGCAGGCCAGTGCAGTTGTCGGCCAG