CANTATAdb - search

Detailed information on CNT30677715

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 1e-55

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-58

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30394677	Setaria viridis	Triticum turgidum	36.5	90.94	85.44	261	forward

Expression of CNT30677715

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 2 (31 aa)
MRSRHRSTKTARGTCFPAPVSLKKVLKASSPP

>peptide 3 (62 aa)
LIQKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

Sequence

>CNT30677715
TTAATCCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACA
CACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACC
CTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGTGAACGAAGGCACGCTTGGCGTACATGAGGT
CAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGTGTAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAG
GAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCA
TAGTCAACAGACAGACGCTCAAGGAGGAGAGAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGT
TGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGC
ATCATCACCTCCTCC