Detailed information on CNT30620135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43473|TBA1_HORVU, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678693Cajanus cajanSetaria viridis20.4518.8890.6264forward
CNT30522343Cajanus cajanSetaria italica30.3531.2588.4295forward
CNT30708966Cajanus cajanGlycine max42.815091.04134forward
CNT30394677Cajanus cajanTriticum turgidum48.5652.9684.87152forward
CNT30555279Cajanus cajanOryza glaberrima64.8665.0682.76203forward
CNT30249355Cajanus cajanAvena sativa24.9210.3789.7478forward
CNT3041150Cajanus cajanChlamydomonas reinhardtii67.7346.4983.96212forward
CNT30360524Cajanus cajanLactuca sativa54.9526.8386.05172forward
CNT30704384Cajanus cajanPrunus avium30.0316.8884.0494forward
CNT30331419Cajanus cajanDioscorea rotundata41.8546.6285.5131forward
CNT30578286Cajanus cajanOryza barthii66.4521.6782.69208forward

Expression of CNT30620135

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSTLMAPSNLREVVREEMIWEMRRLRPEGKGKW*

>peptide 2 (37 aa)
VGDKVGLKLSDVDIDGTVESEGGGKGGNDLGDEAVET*

Sequence

>CNT30620135
GTAGGGGACAAGGTTGGTCTGAAACTCAGTGATGTCGACATTGATGGCACCGTCGAATCTGAGGGAGGTGGTAAGGGAGGAAATGATCTGGGAGATGAGG
CGGTTGAGACCTGAGGGGAAGGGTAAATGGTGAAGCCCAGTTTGGATTTTTTACCGTAATCCACGGAGAGACGCTCGAGCAGGAGGGAGCCGAGGCCGGA
ACCGGTGCCACCGCCGACGGCGTTGAAGACGAGGAAGCCCTGGAGGCCGGTGCAGTTGTCAGCGAGCTTGCGGACGCGATCAAGGCACAGATCTACGATC
TCCTTGCCGACTG