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Detailed information on CNT30298483


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Triticum aestivumSetaria italica63.6538.9391.37394forward
CNT30188104Triticum aestivumSecale cereale35.3831.9298.63219forward
CNT30223925Triticum aestivumHordeum vulgare68.1777.7291422forward
CNT30393441Triticum aestivumTriticum turgidum10078.9599.03619forward
CNT30664734Triticum aestivumTriticum dicoccoides70.4441.3799.77436forward
CNT30142773Triticum aestivumLolium perenne63.4942.3987.02393forward
CNT30685554Triticum aestivumTriticum urartu99.5294.0597.73616forward

Expression of CNT30298483

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 2 (61 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPRCSARAPGWGCPGSRGRPRRRSGRRP*

Sequence

>CNT30298483
TGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTC
TCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACG
GACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAG
AGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGA
GCTCGGCGGCGGTGTCAGGGTCGTCGGCGAGGCCAAGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATC
TGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACC
GCGAGTGGATCACCTCCAG