Detailed information on CNT30554318


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387400Oryza glaberrimaTriticum turgidum30.1641.6391.39209forward
CNT30659761Oryza glaberrimaTriticum dicoccoides26.8438.9191.4186forward
CNT30450549Oryza glaberrimaSaccharum spontaneum38.2471.6290.57265forward
CNT30116945Oryza glaberrimaOryza nivara94.6610099.54656forward

Expression of CNT30554318

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 2 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 3 (67 aa)
NFVNINTCQVKSMQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 4 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 5 (50 aa)
MTSTSIQISVEIENGSGCPRNVLAAAATDDAMAAPLLLLLLRECVGGGEGG

Sequence

>CNT30554318
ATAACTTTGTTAATATCAATACATGTCAGGTAAAGTCTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGA
TCGATGTACAAGTGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTA
ATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCA
ACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGCGGG
CGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTC
CGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGG
AACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGGGGG