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Detailed information on CNT30369826


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza glumipatulaOryza sativa54.4939.9798.21279forward
CNT30677785Oryza glumipatulaSetaria viridis53.3287.2287.18273forward
CNT30727927Oryza glumipatulaCorchorus capsularis33.0125.7284.62169forward
CNT30504800Oryza glumipatulaNicotiana attenuata36.1341.8684.86185forward
CNT30553152Oryza glumipatulaOryza glaberrima59.5744.0898.36305forward
CNT30204030Oryza glumipatulaHelianthus annuus36.9145.5485.19189forward
CNT3024728Oryza glumipatulaPopulus trichocarpa33.0120.8186.98169forward
CNT30100887Oryza glumipatulaOryza rufipogon63.8742.4798.47327forward

Expression of CNT30369826

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSRRHTRTRQQDNSTLADHGIAAVINQAFDTQNIKPPDDDDSSSTRHHHRHPHSRRTQRQPPRSPSPTRRCW*

>peptide 2 (47 aa)
MVGLLRRDHWSVGRKHEVDPWVGHKVGLELIDIHVQSTIKPQGGGQG*

Sequence

>CNT30369826
TTGAACAAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAACACAGGGCACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCCCAAACA
TCAGATCACCACAAGCAAATGTCTCGAAGACACACACGCACGCGGCAACAGGATAACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAATCAGG
CCTTCGACACACAGAACATCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGTCACCATCATCGCCATCCTCATTCTCGTCGGACTCAGCGCCAACC
TCCTCGTAGTCCTTCTCCAACGCGGCGCTGTTGGTGATCTCGGCAACGGAGAGTTGCTCATGGTAGGCCTTCTCCGCAGAGATCACTGGAGCGTAGGACG
AAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGGTCTGGAACTCATTGACATCCACGTTCAGAGCACCATCAAACCTCAGGGAGGCGGTCAGGGA
TGAGATAACCTG