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Detailed information on CNT30204030


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677932Helianthus annuusSetaria viridis50.3628.0985.65209forward
CNT30521842Helianthus annuusSetaria italica50.3622.6485.65209forward
CNT30640127Helianthus annuusNymphaea colorata48.9225.4488.67203forward
CNT30532757Helianthus annuusEucalyptus grandis37.8335.6884.71157forward
CNT30517711Helianthus annuusJuglans regia47.4737.1793.4197forward
CNT30702815Helianthus annuusQuercus lobata39.5244.5790.24164forward
CNT30618174Helianthus annuusSesamum indicum26.9925.9386.61112forward
CNT3021397Helianthus annuusCitrullus lanatus21.4513.4489.8989forward
CNT30727926Helianthus annuusCorchorus capsularis102.1758.1682.78424forward
CNT30379324Helianthus annuusManihot esculenta53.7323.0888.34223forward
CNT30504800Helianthus annuusNicotiana attenuata94.4688.6984.18392forward
CNT30224654Helianthus annuusHordeum vulgare52.2914.2182.95217forward
CNT3086234Helianthus annuusVigna radiata48.9238.385.71203forward
CNT30144939Helianthus annuusMedicago truncatula48.6741.4883.66202forward
CNT30247087Helianthus annuusAvena sativa50.3628.5588.04209forward
CNT30655738Helianthus annuusTriticum dicoccoides48.9230.1686.7203forward
CNT3059767Helianthus annuusArabidopsis lyrata48.6728.4988.61202forward
CNT3041114Helianthus annuusChlamydomonas reinhardtii28.6716.9384.87119forward
CNT30229012Helianthus annuusAnanas comosus54.4627.2687.61226forward
CNT30217674Helianthus annuusKalanchoe fedtschenkoi45.5452.9487.3189forward
CNT30624589Helianthus annuusDaucus carota21.9318.3586.8191forward
CNT30721351Helianthus annuusTriticum spelta45.5428.5586.24189forward
CNT30340361Helianthus annuusEragrostis tef38.830.7887.58161forward
CNT30359416Helianthus annuusLactuca sativa33.0119.1683.94137forward
CNT30369826Helianthus annuusOryza glumipatula45.5436.9185.19189forward
CNT30482824Helianthus annuusChara braunii41.6922.7383.24173forward
CNT30430260Helianthus annuusPapaver somniferum47.4733.8589.85197forward
CNT30570286Helianthus annuusVitis vinifera37.1131.390.26154forward
CNT3052700Helianthus annuusAmborella trichopoda21.4528.1683.1589forward
CNT30106557Helianthus annuusOryza longistaminata30.3658.8887.3126forward
CNT3024728Helianthus annuusPopulus trichocarpa53.7327.4686.55223forward
CNT30100634Helianthus annuusOryza rufipogon44.5853.1685.41185forward
CNT30578254Helianthus annuusOryza barthii30.3645.1688.1126forward
CNT30593783Helianthus annuusEragrostis curvula26.0220.4582.41108forward
CNT30333509Helianthus annuusCynara cardunculus35.6626.9187.16148forward
CNT30724701Helianthus annuusLupinus angustifolius48.9217.9890.15203forward

Expression of CNT30204030

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKWILGYGTKLVWNSVTSTFRAPSNLKDAVKDEITC

>peptide 2 (34 aa)
PLHNPSPTQQDPHELQRILLPPYPHPRTSEQRHV*

>peptide 3 (53 aa)
LFIILLQRSKILTSFREFSFLHTLTHVPVNKGTFSIHQVKLVVNAREHLSHAS*

>peptide 4 (40 aa)
MRENTSATLVEFEIMQTALCTLARSPPGTTVGAVGDLSNR*

Sequence

>CNT30204030
CCTCTTCATAATCCTTCTCCAACGCAGCAAGATCCTCACGAGCTTCAGAGAATTCTCCTTCCTCCATACCCTCACCCACGTACCAGTGAACAAAGGCACG
TTTAGCATACATCAGGTCAAACTTGTGGTCAATGCGAGAGAACACCTCAGCCACGCTAGTTGAGTTTGAGATCATGCAAACAGCCCTCTGCACCTTAGCA
AGGTCTCCACCAGGCACCACAGTTGGCGCTGTTGGTGATCTCAGCAACAGATAGTTGCTCGTGATATGCCTTCTCGGCTGAAATCACTGGAGCGTAAGAG
GAAAGCATGAAGTGGATCCTCGGGTATGGAACCAAGTTGGTCTGGAACTCCGTCACGTCAACGTTCAGGGCACCATCAAACCTCAAAGATGCAGTCAAGG
ATGAAATAACCTGTG