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Detailed information on CNT30100887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640127Oryza rufipogonNymphaea colorata23.3822.5685180forward
CNT30532757Oryza rufipogonEucalyptus grandis29.0950.9185.27224forward
CNT30517711Oryza rufipogonJuglans regia26.6238.6883.9205forward
CNT30702815Oryza rufipogonQuercus lobata20.7843.4883.12160forward
CNT30727926Oryza rufipogonCorchorus capsularis56.8860.0881.05438forward
CNT30553152Oryza rufipogonOryza glaberrima45.3250.4399.43349forward
CNT3059767Oryza rufipogonArabidopsis lyrata26.2328.4983.17202forward
CNT30624589Oryza rufipogonDaucus carota13.921.5785.98107forward
CNT30369826Oryza rufipogonOryza glumipatula42.4763.8798.47327forward
CNT30430260Oryza rufipogonPapaver somniferum24.8132.8282.72191forward
CNT30333509Oryza rufipogonCynara cardunculus19.7427.6482.89152forward

Expression of CNT30100887

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVGLLRRDHWSVGRKHEVDPWVGHKVGLELIDIHVQSTIKPQGGGQ

>peptide 2 (31 aa)
MYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 3 (66 aa)
MPSPTYQWTKARLEYMRSNLWSMRENTSTTLVELEIMHTALCSRPCTCRGEGRTWPSWRMARRHCW*

Sequence

>CNT30100887
CCACAGTCGAGAGTAAACCGTAATCAACACAAGAAACAAACATAAAATTGAACAAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAAAACAGGGC
ACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCCCAAACATCAGATCACCACAAGCAAATGTCTCGAAGACACACGCACACGGCAACAGGATA
ACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAATCAGGCCTTGACACACAGAACATCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGT
CACCATCATCGCCATCCTCATTCTCGTCGGACTCAGCGCCAACCTCCTCGTAGTCCTTCTCCAACGCGGCGAGATCCTCACGGGCCTCAGAGAACTCACC
CTCCTCCATGCCCTCACCCACGTACCAGTGGACGAAGGCGCGCTTGGAGTACATGAGGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACGACGCTG
GTGGAGTTGGAGATCATGCACACGGCCCTCTGCAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCACT
GTTGGTGATCTCGGCAACAGAGAGTTGCTCATGGTAGGCCTTCTCCGCAGAGATCACTGGAGCGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGC
ACAAGGTTGGTCTGGAACTCATTGACATCCACGTTCAGAGCACCATCAAACCTCAGGGAGGCGGTCAGGG