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Detailed information on CNT30727927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30228891Corchorus capsularisAnanas comosus45.0544.5185.47296forward
CNT30624589Corchorus capsularisDaucus carota18.5724.688.52122forward
CNT30340361Corchorus capsularisEragrostis tef42.4753.3584.23279forward
CNT30369826Corchorus capsularisOryza glumipatula25.7233.0184.62169forward
CNT30578254Corchorus capsularisOryza barthii38.9691.7680.86256forward

Expression of CNT30727927

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MTGAYEESMKWILGYGTKLVWNSVTSTFNAPSNLSEAVKEEIT*

Sequence

>CNT30727927
TGGTACTAGTACTTCGCAATTCTCAAACAAAAAGGTAATTCGAGGTCAGGGCTGGGTTTTAAAGAACTGGGGCCAAAATATGCCATGATCATTTGAAGAA
GCCAAGGCCCACAAACGCATATTGGAATCACAAATACAAATTGTCAACAATTAAACGATAGCATAGAATACCAAAAGAGTATTTCTTTAACAGAAGTCTT
CAACAAGCTTTGAAACGGAGATAAGAATCAAAGCTGACAACATACAGAAGCAAACATAAAAACGAAAGGGACAACAATTCATCGGCTCACAAACTGCAAG
AAGCCCTCAAGTCAAACATATATCTAGTACTCCTCGTCACCATCATCCTCACCCTCAGCTGACTCAGCACCAACTTCTTCATAATCCTTCTCAAGTGCAG
CAAGATCCTCACGAGCCTCAGAGAATTCACCTTCTTCCATACCCTCACCCACGTACCAGTGAACAAAGGCACTGTTGGTGATTTCAGAAACTGAGAGCTG
TTCATGGTAAGCTTTCTCGGCAGAGATGACTGGAGCATATGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACCAAGTTGGTCTGGAATTCAGTCACA
TCCACGTTCAATGCACCATCAAACCTGAGTGAGGCAGTCAAGGAGGAAATCACCTGA