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Detailed information on CNT30553152


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza glaberrimaOryza sativa39.8839.5499.28276forward
CNT30517711Oryza glaberrimaJuglans regia24.2831.785.12168forward
CNT30702815Oryza glaberrimaQuercus lobata23.744.5782.93164forward
CNT30727926Oryza glaberrimaCorchorus capsularis39.1637.1784.5271forward
CNT30504800Oryza glaberrimaNicotiana attenuata20.6632.3584.62143forward
CNT3059767Oryza glaberrimaArabidopsis lyrata23.4122.8582.72162forward
CNT30369826Oryza glaberrimaOryza glumipatula44.0859.5798.36305forward
CNT30430260Oryza glaberrimaPapaver somniferum24.2828.8782.14168forward
CNT3052700Oryza glaberrimaAmborella trichopoda14.631.9687.13101forward
CNT30100887Oryza glaberrimaOryza rufipogon50.4345.3299.43349forward
CNT30575848Oryza glaberrimaOryza barthii38.5829.7100267forward
CNT30333509Oryza glaberrimaCynara cardunculus15.92083.64110forward

Expression of CNT30553152

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MPSPTYQWTKARLEYMRSNLWSMRENTSTTLVELEIMHTALCTLARVALGHHGGWLEGAVGDLGNGELLMVGLLRRDHW

Sequence

>CNT30553152
CTTTTCTTAAGATCGGAGCCAGTAATGGGTTGTCAGCAGGAGAAGCACGTAAACCTTGAAACATACTAAGTTCCACAGTCGAGAGTAAACCGTAATCAAC
ACAAGAAACAAACATAAAATTGAACAAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAACACAGGGCACACAGGTTACAACAACGAGGGTTGTAA
GCCCATTAAGCCCCAAACATCAGATCACCACAAGCAAATGCCTCGAAGACACACGCACACGGCAACAGGATAACTCCACACTGGCAGATCATGGGATAGC
AGCAGTTATCAATCAGGCCTTGACACACAGAACATCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGTCACCATCATCGCCATCCTCATTCTCGTC
GGACTCAGCGCCAACCTCCTCATCCTCGCGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACGTACCAGTGGACGAAGGCGCGCTTGGAGTAC
ATGAGGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCGAGGGTCGCAC
TTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATCTCGGCAACGGAGAGTTGCTCATGGTAGGCCTTCTCCGCAGAGATCACTGG