Detailed information on CNT30552830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710754Oryza glaberrimaGlycine max17.022587.6965forward
CNT30303130Oryza glaberrimaTriticum aestivum19.1122.6789.0473forward
CNT30686005Oryza glaberrimaTriticum urartu19.1120.7491.7873forward
CNT30369645Oryza glaberrimaOryza glumipatula63.3547.7399.17242forward
CNT30100563Oryza glaberrimaOryza rufipogon74.0830.3100283forward
CNT30575409Oryza glaberrimaOryza barthii74.0845.57100283forward

Expression of CNT30552830

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGDLISPTRHELIKRLTPPPPPPYLGTRRLKTTDTGERARCR*

>peptide 2 (28 aa)
MKNWDPLVLGPAFAMDRMPGLSCLNLNTS

>peptide 3 (30 aa)
TGVRSQKIHGSQMFSLIDSDIIEAATRIKI*

Sequence

>CNT30552830
ACACAGGTGTAAGATCACAGAAAATCCACGGATCCCAAATGTTCTCATTGATTGATAGCGATATCATAGAAGCAGCGACACGAATTAAGATTTAAAACCA
ACCCCAAGAAGGATCGCAGATCCAACTCCACCGAATCGATCCAAGAACTCCGCCTAATCCAACCAAACCATGGGCGATCTCATCTCACCAACACGACACG
AACTCATAAAAAGACTAACACCACCACCACCTCCTCCTTATTTAGGGACTCGACGACTCAAGACGACTGATACTGGCGAAAGGGCACGGTGCAGATGAAG
AACTGGGACCCGTTAGTGTTGGGCCCGGCGTTCGCCATGGACAGGATGCCGGGGCTGTCGTGCTTGAACTTGAACACCTCGT