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Detailed information on CNT30550616


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Oryza brachyanthaOryza sativa18.7333.0496.43112forward
CNT30671041Oryza brachyanthaSetaria viridis16.3926.8586.7398forward
CNT30369645Oryza brachyanthaOryza glumipatula27.7632.7490.96166forward
CNT30100563Oryza brachyanthaOryza rufipogon27.7617.7790.96166forward
CNT30575409Oryza brachyanthaOryza barthii20.0719.3289.17120forward

Expression of CNT30550616

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MMTGLEVLPPRDPTFSMDLTTSMGRDLDLVSPTTTLLTAPRYLGTQTTTTTGTGDKERGTAQI*

Sequence

>CNT30550616
TTAGATCCCAAATGTTTATCGATTTTTTTTCTCATTGATTGATAGCAGTAGCAGCAGCATAACAGAAGCATCAGCGACACGAATTAAGATAAACCCAAGA
TGGATCGCAGATCCAACTCAACCACCGAATCGAAGAACTCCGCCTAATCCAACCAAAACCCAACGCCCATTGGGGAGAGATCTCGATCTCGTCTCACCAA
ACCACCACACGACTCACCGCACCTCGTTATTTAGGGACTCAGACGACGACGACGACTGGTACTGGGGATAAGGAAAGGGGAACAGCACAGATCTAGGAGA
GCTGGCCGCAGTCGGCGATGATGACCGGCTTGGAGGTGCTGCCGCCGCGGGATCCCACCTTCTCGATGGACTTGACGACGTCCATGGGGAGAGATCTCGA
TCTCGTCTCCCCAACCACCACACTACTCACCGCACCTCGTTATTTAGGGACTCAGACGACGACGACGACTGGTACTGGGGATAAGGAAAGGGGAACAGCA
CAGATCTAGGAGAGCTGGCCGCAGTCGGCGATGATGACCGGCTTGGAGGTGCTGCCGCCGCGGGATCCCACCTTCTCGATGGACTTGACGACGTCCAT