« Back to Oryza glumipatula search


Detailed information on CNT30369597


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691407Oryza glumipatulaOryza sativa44.9421.76100111forward
CNT30520010Oryza glumipatulaSetaria italica62.7540.987.74155forward
CNT30552828Oryza glumipatulaOryza glaberrima61.1327.91100151forward
CNT30663631Oryza glumipatulaTriticum dicoccoides20.6511.4694.1251forward
CNT30461908Oryza glumipatulaSaccharum spontaneum20.244.049450forward
CNT30132292Oryza glumipatulaLolium perenne54.6639.2491.11135forward
CNT30231759Oryza glumipatulaAnanas comosus20.6511.3190.251forward
CNT30595730Oryza glumipatulaOryza meridionalis24.297.9610060forward
CNT30109084Oryza glumipatulaOryza longistaminata55.8712.5899.28138forward
CNT30116075Oryza glumipatulaOryza nivara25.516.2110063forward

Expression of CNT30369597

Peptides detected in this lncRNA

>peptide 1 (52 aa)
AAVVDADVVVGVAGGEGDLRGGGEGGVAEVDGAELEVLQVEGRLGGAERELA*

Sequence

>CNT30369597
GGCGGCGGTAGTGGACGCCGACGTGGTCGTTGGGGTTGCGGGAGGCGAGGGTGACCTGCGCGGTGGCGGAGAGGGAGGGGTCGCCGAGGTCGACGGAGCG
GAGCTGGAGGTCCTGCAGGTAGAAGGACGGCTTGGAGGGGCGGAGCGCGAGCTAGCTTAGCTACGAGTAGTAGAGTGAGAGAGTGAGCTGCGAGCTGTTG
CTGAGTGAGAGAGAGAGGGGCGTTAGATATGAAAGCGAGTAAGAGAG