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Detailed information on CNT30109084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691407Oryza longistaminataOryza sativa13.6729.41100150forward
CNT30519659Oryza longistaminataSetaria italica27.4438.5985.38301forward
CNT30552828Oryza longistaminataOryza glaberrima23.2547.1394.9255forward
CNT30132292Oryza longistaminataLolium perenne13.2242.1591.03145forward
CNT30595730Oryza longistaminataOryza meridionalis19.628.5197.67215forward
CNT30369597Oryza longistaminataOryza glumipatula12.5855.8799.28138forward
CNT30116075Oryza longistaminataOryza nivara19.3320.8997.64212forward

Expression of CNT30109084

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MCPTAPRPXXXXXXXXXXXXXXHLTRPSTFTCSATYPAAMSCLSASATNPATGTDSPESTGDQMVTSRWPW*

>peptide 2 (47 aa)
MNVISNFILSHMHELHEHKKKKITARGVYGFTRPMNLINYHIATSRY*

>peptide 3 (30 aa)
SLRCTCSSLNFIGSSIASSTTMVNFSRNIT*

Sequence

>CNT30109084
ATCTCTTCGGTGTACTTGCTCTTCTCTGAACTTCATCGGTTCATCCATTGCATCATCAACAACTATGGTTAATTTCTCCAGAAATATTACGTGAATATAT
ATTATTAACAATAATTCTAAAATTACAGCAACGAAATTATACTAGTACACTTCATATAGGAAATTAAACGTGTTGCAATGGTATACATATGAACGTAATA
AGTAACTTTATTCTCTCACATATGCATGAGCTACATGAACACAAAAAAAAAAAAATAACAGCTCGAGGGGTTTACGGCTTTACGCGACCGATGAACTTAA
TTAATTACCATATTGCCACTAGCCGCTACTGAAATTTGTGATTCTGTCACACCTCGACGCTGCACCCTGTCGGCTGCGTGAACCTGAGCGACGCGACGGC
GCCGGCGCCGGTGCCGTTCACGACGGCGGCGGGGTCGCCCCCGAGGGTCATGTGCCCCACGGCCCCGCGGCCGGCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCACTTGACGCGGCCGTCGACCTTCACCTGCAGCGCGACGTACCCGGCGGCGATGTCCTGCCTGAGCGCGTCGGCGACGAACCCGG
CCACGGGGACGGACTCGCCGGAGAGCACCGGCGACCAGATGGTGACGTCGCGGTGGCCCTGGTAGGTCGGCGGGAGGGAGACGGGCACCGTGACGGGCTC
GTCGCGGTAGGTGACGAAGACGTCGAGGCGGNNNNNNNNNNTAGACGCCGACGCGGTCGTTGGGGTTGCGGGAGGCGAGGGTGACCTGCGCGGTGGCGGA
GAGGGAGGGGTCGCCGAGGTCGACGGAGCGGAGCTGGAGGTCCTGCAGGTAGAAGGACGGCTTGGAGGGGCGGAGCGCGAGGTAGACGACGAGCGCGATG
AAGCCGACGACGAGGACCAGGGCGACGGCGGCGGCGGCGGCGGCGCGAGCTAGCTTAGCTACGAGCAGTAGAGTGAGAGAGTGAGCTGCGAGCTGTTGCT
GAGTGAGAGAGAGAGAGAGAGGGGCGTTAGATATGAAAGCGAGTAAGAGAGTAATAATGGCTTTTAAGATTAGTGGAGCGAACGAATTGAATTTAAG