Detailed information on CNT30552828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691407Oryza glaberrimaOryza sativa42.1444.71100228forward
CNT30519898Oryza glaberrimaSetaria italica46.5834.3887.7252forward
CNT30461908Oryza glaberrimaSaccharum spontaneum25.8811.3287.86140forward
CNT30132292Oryza glaberrimaLolium perenne32.7251.4590.96177forward
CNT30369597Oryza glaberrimaOryza glumipatula27.9161.13100151forward
CNT30109084Oryza glaberrimaOryza longistaminata47.1323.2594.9255forward
CNT30592989Oryza glaberrimaEragrostis curvula8.1321.8990.9144reverse complement

Expression of CNT30552828

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MKPTTRTSARMHAAIPPQHRRRWCSRLWCFSLLMAATAAAAAARASLATSSRVRE*

>peptide 2 (47 aa)
VAAGDPAADLPLDAAVDLHLQRDVPGGDVLPERVGGRETGTVTGSSR*

Sequence

>CNT30552828
GGTAGCTGCCGGAGACCCAGCTGCCGACCTTCCACTTGACGCGGCCGTCGACCTTCACCTGCAGCGCGACGTACCCGGCGGCGACGTCCTGCCTGAGCGC
GTCGGCGGGAGGGAGACGGGCACCGTGACGGGTTCGTCGCGGTAGGTGACGAAGACGTCGAGGCGGCGGTAGTGGACGCCGACGTGGTCGTTGGGGTTGC
GGGAGGCGAGGGTGACCTGCGCGGTGGCGGAGAGGGAGGGGTCGCCGAGGTCGACGGAGCGGAGCTGGAGGTCCTGCAGGTAGAAGGACGGCTTGGAGGG
GCGGAGCGCGAGGTAGACGACGAGCGCGATGAAGCCGACGACGAGGACCAGCGCCAGGATGCACGCCGCCATCCCGCCGCAGCATCGCCGGAGGTGGTGC
TCCCGCTTGTGGTGCTTCTCCTTGCTCATGGCGGCGACGGCGGCGGCGGCGGCGGCGCGAGCTAGCTTAGCTACGAGTAGTAGAGTGAGAGAGTGAGCTG
CGAGCTGTTGCTGAGTGAGAGAGAGAGAGGGGCGTTAGATA